Make a new deposit object | Set the working version | Start working with data | What do the fields mean? | Citation information | Working version deposit metadata | Functional programming approach | Check available versions of the dataset | Get latest version of the data | Read the data | Cite the data | What about the data sources? | What do the fields in VIRION mean?
Package: virionData 2.0.0
Collin Schwantes
virionData: Access Versioned VIRION Data
This package provides an ergonomic interface for accessing the VIRION dataset (https://doi.org/10.5281/zenodo.15643003).
Authors:
virionData_2.0.0.tar.gz
virionData_2.0.0.zip(r-4.7-any)virionData_2.0.0.zip(r-4.6-any)virionData_2.0.0.zip(r-4.5-any)
virionData_2.0.0.tgz(r-4.6-any)virionData_2.0.0.tgz(r-4.5-any)
virionData_2.0.0.tar.gz(r-4.7-any)virionData_2.0.0.tar.gz(r-4.6-any)
virionData_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
virionData/json (API)
| # Install 'virionData' in R: |
| install.packages('virionData', repos = c('https://viralemergence.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/viralemergence/viriondata/issues
Pkgdown/docs site:https://viralemergence.github.io
Last updated from:bfa1461ecf. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 354 | ||
| source / vignettes | OK | 371 | ||
| linux-release | OK | 304 | ||
| macos-release | OK | 314 | ||
| macos-oldrel | OK | 279 | ||
| windows-devel | OK | 250 | ||
| windows-release | OK | 224 | ||
| windows-oldrel | OK | 263 | ||
| wasm-release | OK | 114 |
Exports:batch_download_deposit_versionsdepositdeposit_summarydownload_deposit_versiondownload_refreshexport_deposit_bibtexexport_deposit_metadataget_all_versionsget_data_dictionaryget_individual_dictionaryget_jsonget_version_citationget_versioned_datalist_deposit_versionsmake_urlsanitize_idsanitize_version
Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrfrictionlessfsgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangsystibbletidyselecttzdbutf8vctrsvroomwithryaml
Getting Started
Last update: 2026-07-09
Started: 2025-06-18
Working with Virion 2.0
Last update: 2026-07-09
Started: 2026-07-09
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Batch download deposit versions | batch_download_deposit_versions |
| deposit | deposit |
| Simple summary data frame for the deposit | deposit_summary |
| Download deposit version | download_deposit_version |
| Download or redownload data | download_refresh |
| Dummy function to pass RMD check | dummy_imports |
| Get bibtex entry for a deposit. | export_deposit_bibtex |
| Export Deposit Metadata in various formats | export_deposit_metadata |
| Get all deposit versions | get_all_versions |
| Get Data Dictionary for a data Package | get_data_dictionary |
| Get the dictionary for a single resource | get_individual_dictionary |
| Get json | get_json |
| Get the name of a resource | get_resource_name |
| Get Version Citation | get_version_citation |
| Get a specific version of the data | get_versioned_data |
| Get Versions of a Deposit on Zenodo | list_deposit_versions |
| Make Zenodo URLs | make_url |
| Sanitize a zenodo id | sanitize_id |
| Check version ids | sanitize_version |