Make a new deposit object | Set the working version | Start working with data | What do the fields mean? | Citation information | Working version deposit metadata | Functional programming approach | Check available versions of the dataset | Get latest version of the data | Read the data | Cite the data | What about the data sources? | What do the fields in VIRION mean?

The Whole game | Templates | Disease Data | Project Metadata | Combine disease data and project metadata | Combine components | Make JSON | Validate your json! | Handling Errors | Excuse me? What does this mean? | How do I correct this error? | Best practices for free text fields

Summary | What is a JSON-schema | Wildlife Disease Data Standard (WDDS) Structure | Important vocabulary | Best practices for free text fields | Terms | disease_data | sampleID | animalID | latitude | longitude | spatialUncertainty | collectionDay | collectionMonth | collectionYear | sampleCollectionMethod | sampleMaterial | sampleCollectionBodyPart | hostIdentification | organismSex | liveCapture | hostLifeStage | age | ageUnits | mass | massUnits | length | lengthMeasurement | lengthUnits | organismQuantity | organismQuantityUnits | detectionTarget | detectionMethod | forwardPrimerSequence | reversePrimerSequence | geneTarget | primerCitation | probeTarget | probeType | probeCitation | detectionOutcome | detectionMeasurement | detectionMeasurementUnits | parasiteIdentification | parasiteID | parasiteLifeStage | genbankAccession | project_metadata | methodology | creators | titles | identifier | subjects | publicationYear | rights | descriptions | language | fundingReferences | relatedIdentifiers

Read in and Clean up the excel spreadsheet | Differences in required fields | Converting WDDS Data to Pharos Data | Convert the data | Upload data into Pharos | Improve data for upload | Pharos doesn't like NA's

Why extend the standard? | Before you extend the standard, review it. | Extending the Disease Data component | Extending the Project Metadata Component | Validate with your extended schema | How to communicate your changes?

Required fields | Load in the CSV and clean it up | Restructure data | Make the json! | Validate Project metadata | What if we just use the project metadata template?

What is Zenodo? | Whats the difference between WDDS project metadata and Zenodo deposit metadata? | Read in project metadata | Map fields to DCMI | Getting started with deposits | Create deposit

Required fields | Read in and Clean up the excel spreadsheet | Check for required Fields | Rename Fields to match standard | Prep for JSON | Validate disease data

load required packages for vignette | Loading the data | Visualizing the data