Package: insectDisease 1.2.2

Tad Dallas

insectDisease: Ecological Database of the World's Insect Pathogens

David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at <https://edwip.ecology.uga.edu/>.

Authors:Tad Dallas [aut, cre]

insectDisease_1.2.2.tar.gz
insectDisease_1.2.2.zip(r-4.5)insectDisease_1.2.2.zip(r-4.4)insectDisease_1.2.2.zip(r-4.3)
insectDisease_1.2.2.tgz(r-4.4-any)insectDisease_1.2.2.tgz(r-4.3-any)
insectDisease_1.2.2.tar.gz(r-4.5-noble)insectDisease_1.2.2.tar.gz(r-4.4-noble)
insectDisease_1.2.2.tgz(r-4.4-emscripten)insectDisease_1.2.2.tgz(r-4.3-emscripten)
insectDisease.pdf |insectDisease.html✨
insectDisease/json (API)
NEWS

# Install 'insectDisease' in R:
install.packages('insectDisease', repos = c('https://viralemergence.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/viralemergence/insectdisease/issues

Datasets:
  • assocref - Insect host-parasite interactions
  • citation - Citation information for a subset of host-pathogen interactions
  • hostTaxonomy - Cached version of host taxonomy
  • hosts - Detailed information on insect host species
  • negative - Information on negative host-parasite interactions
  • nemaref - Citation information for host-nematode interactions
  • nematode - Information on nematode parasite occurrences
  • new_asso - New_asso
  • newnema - New_asso
  • noassref - Noassref
  • nvpassoc - Information on non-viral pathogens of insect hosts
  • pathTaxonomy - Cached version of pathogen taxonomy
  • pathogen - Information on pathogen species in the database
  • viraref - Citation information for host-virus interactions
  • viruses - Information on viral pathogen occurrences

On CRAN:

1 exports 13 stars 1.71 score 122 dependencies 2 scripts 221 downloads

Last updated 1 years agofrom:ca1c191e15. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 13 2024
R-4.5-winOKSep 13 2024
R-4.5-linuxOKSep 13 2024
R-4.4-winOKSep 13 2024
R-4.4-macOKSep 13 2024
R-4.3-winOKSep 13 2024
R-4.3-macOKSep 13 2024

Exports:getNCBI

Dependencies:apeaskpassassertthatbackportsbase64encbitbit64bslibcachemcheckmateclicliprclustercodetoolscolorspaceconditionzcpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapisassscalessolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8uuidvctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo

Exploring the Ecological Database of World's Insect Pathogens

Tad Dallas

Rendered fromdataManip.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2022-08-23
Started: 2020-11-18