Package: insectDisease 1.2.3

Tad Dallas

insectDisease: Ecological Database of the World's Insect Pathogens

David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at <https://edwip.ecology.uga.edu/>.

Authors:Tad Dallas [aut, cre]

insectDisease_1.2.3.tar.gz
insectDisease_1.2.3.zip(r-4.7)insectDisease_1.2.3.zip(r-4.6)insectDisease_1.2.3.zip(r-4.5)
insectDisease_1.2.3.tgz(r-4.6-any)insectDisease_1.2.3.tgz(r-4.5-any)
insectDisease_1.2.3.tar.gz(r-4.7-any)insectDisease_1.2.3.tar.gz(r-4.6-any)
insectDisease_1.2.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
insectDisease/json (API)
NEWS

# Install 'insectDisease' in R:
install.packages('insectDisease', repos = c('https://viralemergence.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/viralemergence/insectdisease/issues

Datasets:
  • assocref - Insect host-parasite interactions
  • citation - Citation information for a subset of host-pathogen interactions
  • hosts - Detailed information on insect host species
  • hostTaxonomy - Cached version of host taxonomy
  • negative - Information on negative host-parasite interactions
  • nemaref - Citation information for host-nematode interactions
  • nematode - Information on nematode parasite occurrences
  • new_asso - New_asso
  • newnema - New_asso
  • noassref - Noassref
  • nvpassoc - Information on non-viral pathogens of insect hosts
  • pathogen - Information on pathogen species in the database
  • pathTaxonomy - Cached version of pathogen taxonomy
  • viraref - Citation information for host-virus interactions
  • viruses - Information on viral pathogen occurrences

On CRAN:

Conda:

software

4.15 score 14 stars 3 scripts 6 downloads 1 exports 58 dependencies

Last updated from:35c126cda8. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK140
source / vignettesOK214
linux-release-x86_64OK138
macos-release-arm64OK138
macos-oldrel-arm64OK235
windows-develOK115
windows-releaseOK82
windows-oldrelOK99
wasm-releaseOK132

Exports:getNCBI

Dependencies:apeaskpassclicpp11crayoncrulcurldata.tabledigestdplyrfastmatchgenericsgluehmshttpcodehttrigraphjsonlitelatticelifecyclemagrittrMatrixmimenatservnlmeopensslphangornpillarpkgconfigplyrprettyunitsprogressquadprogR6Rcpprentrezritisrlangrnclrotlrredlistsolriumstringisystaxizetibbletidyselecttriebeardurltoolsutf8vctrsWikipediRwikitaxawithrworrmsXMLxml2zoo

Exploring the Ecological Database of World's Insect Pathogens

Tad Dallas

Rendered fromdataManip.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2022-08-23
Started: 2020-11-18