Package: insectDisease 1.2.3

Tad Dallas

insectDisease: Ecological Database of the World's Insect Pathogens

David Onstad provided us with this insect disease database, sometimes referred to as the 'Ecological Database of the Worlds Insect Pathogens' or EDWIP. Files have been converted from 'SQL' to csv, and ported into 'R' for easy exploration and analysis. Thanks to the Macroecology of Infectious Disease Research Coordination Network (RCN) for funding and support. Data are also served online in a static format at <https://edwip.ecology.uga.edu/>.

Authors:Tad Dallas [aut, cre]

insectDisease_1.2.3.tar.gz
insectDisease_1.2.3.zip(r-4.5)insectDisease_1.2.3.zip(r-4.4)insectDisease_1.2.3.zip(r-4.3)
insectDisease_1.2.3.tgz(r-4.5-any)insectDisease_1.2.3.tgz(r-4.4-any)insectDisease_1.2.3.tgz(r-4.3-any)
insectDisease_1.2.3.tar.gz(r-4.5-noble)insectDisease_1.2.3.tar.gz(r-4.4-noble)
insectDisease_1.2.3.tgz(r-4.4-emscripten)insectDisease_1.2.3.tgz(r-4.3-emscripten)
insectDisease.pdf |insectDisease.html✨
insectDisease/json (API)
NEWS

# Install 'insectDisease' in R:
install.packages('insectDisease', repos = c('https://viralemergence.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/viralemergence/insectdisease/issues

Datasets:
  • assocref - Insect host-parasite interactions
  • citation - Citation information for a subset of host-pathogen interactions
  • hostTaxonomy - Cached version of host taxonomy
  • hosts - Detailed information on insect host species
  • negative - Information on negative host-parasite interactions
  • nemaref - Citation information for host-nematode interactions
  • nematode - Information on nematode parasite occurrences
  • new_asso - New_asso
  • newnema - New_asso
  • noassref - Noassref
  • nvpassoc - Information on non-viral pathogens of insect hosts
  • pathTaxonomy - Cached version of pathogen taxonomy
  • pathogen - Information on pathogen species in the database
  • viraref - Citation information for host-virus interactions
  • viruses - Information on viral pathogen occurrences

On CRAN:

Conda:

4.41 score 13 stars 2 scripts 44 downloads 1 exports 117 dependencies

Last updated 2 months agofrom:35c126cda8. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 15 2025
R-4.5-winOKFeb 15 2025
R-4.5-macOKFeb 15 2025
R-4.5-linuxOKFeb 15 2025
R-4.4-winOKFeb 15 2025
R-4.4-macOKFeb 15 2025
R-4.3-winOKFeb 15 2025
R-4.3-macOKFeb 15 2025

Exports:getNCBI

Dependencies:apeaskpassassertthatbackportsbase64encbitbit64bslibcachemcheckmateclicliprclustercolorspacecpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttrigraphisobandjquerylibjsonliteknitrlabelinglatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspurrrquadprogR6rappdirsratelimitrRColorBrewerRcppreadrrentrezrexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapisassscalessolriumstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2yamlzoo

Exploring the Ecological Database of World's Insect Pathogens

Tad Dallas

Rendered fromdataManip.Rmdusingknitr::rmarkdownon Feb 15 2025.

Last update: 2022-08-23
Started: 2020-11-18