Package: epizootic 1.0.0

July Pilowsky

epizootic: Spatially Explicit Population Models of Disease Transmission in Wildlife

This extension of the pattern-oriented modeling framework of the 'poems' package provides a collection of modules and functions customized for modeling disease transmission on a population scale in a spatiotemporally explicit manner. This includes seasonal time steps, dispersal functions that track disease state of dispersers, results objects that store disease states, and a population simulator that includes disease dynamics.

Authors:July Pilowsky [aut, cre], National Science Foundation Biology Integration Institute 2213854 [fnd]

epizootic_1.0.0.tar.gz
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epizootic_1.0.0.tgz(r-4.4-x86_64)epizootic_1.0.0.tgz(r-4.4-arm64)epizootic_1.0.0.tgz(r-4.3-x86_64)epizootic_1.0.0.tgz(r-4.3-arm64)
epizootic_1.0.0.tar.gz(r-4.5-noble)epizootic_1.0.0.tar.gz(r-4.4-noble)
epizootic_1.0.0.tgz(r-4.4-emscripten)epizootic_1.0.0.tgz(r-4.3-emscripten)
epizootic.pdf |epizootic.html✨
epizootic/json (API)
NEWS

# Install 'epizootic' in R:
install.packages('epizootic', repos = c('https://viralemergence.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/viralemergence/epizootic/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

5.59 score 3 stars 5 scripts 204 downloads 11 exports 58 dependencies

Last updated 2 months agofrom:062b622f13. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 02 2024
R-4.5-win-x86_64OKNov 02 2024
R-4.5-linux-x86_64OKNov 02 2024
R-4.4-win-x86_64OKNov 02 2024
R-4.4-mac-x86_64OKNov 02 2024
R-4.4-mac-aarch64OKNov 02 2024
R-4.3-win-x86_64OKNov 02 2024
R-4.3-mac-x86_64OKNov 02 2024
R-4.3-mac-aarch64OKNov 02 2024

Exports:aspatial_siricheck_simulator_inputsdisease_dispersaldisease_resultsdisease_simulatordisease_transformationdisease_transitionsDiseaseModelSimulationHandlersiri_model_summersiri_model_winter

Dependencies:abcabc.dataBHclicodetoolscpp11DEoptimRdoParalleldplyrextraDistrfansiforeachforeignfossilgdistancegenericsglueigraphiteratorslatticelhslifecyclelocfitmagrittrmapsMASSMatrixMatrixModelsmetRologynnetnumDerivpillarpkgconfigpoemspurrrqsquantregR6RApiSerializerasterRcppRcppArmadilloRcppParallelrlangrobustbaseshapefilesspSparseMstringfishsurvivalterratibbletidyselecttrendtruncnormutf8vctrswithr

Simulating the house finch conjunctivitis epizootic

Rendered frommycoplasma.Rmdusingknitr::rmarkdownon Nov 02 2024.

Last update: 2024-09-26
Started: 2024-09-26